All functions
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FoodWeb_SQO()
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Core food web model |
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biota
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biota data input |
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cntcalc()
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Format calculated contaminant concentrations |
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constants
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constants data input |
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contam
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contam data input |
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indic_sum_fun()
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Summary function for calculating bsaf and cbiota totals for each indicator species |
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plo_bsaf()
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plot bsaf and cbiota for contaminant |
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genlognorm_fun()
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Generate log normal variables from mean and sd inputs |
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modsedcon_mcs_fun()
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mcs function for sediment concentration |
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modtiscon_mcs_fun()
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mcs function for modelled tissue concentration |
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suf_mcs_fun()
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site use mcs function |
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mcs_sum_fun()
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Summarize MCS results, compare with observed |
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mcs_plo()
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Create MCS summary plot |
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rescmb()
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Combine bsaf and cbiota for plot/table of contaminant |
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tab_bsaf()
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Table of bsaf and cbiota for contaminant |
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bioaccum_batch()
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Run bioaccumulation model function FoodWeb_SQO in batch for all species, contaminants |
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biota_preyprop
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biota_preyprop data input |
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finalsiteassess
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finalsiteassess data input |
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mcs_fun()
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MCS function |
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mcsparms
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mcsparms data input |
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sqo_sum_fun()
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SQO assessment summary |
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tischmthr
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tischmthr data input |
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wgt_avg_fun()
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Calculate weighted average observed tissue concentration (ng/g), from empirical data |