IPI.RdEstimate IPI scores for PHAB using station and physical habitat data
IPI(stations, phab, qa = TRUE, allerr = TRUE, log = FALSE)
| stations |
|
|---|---|
| phab |
|
| qa | logical indicating of quality assurance columns are appended to the output |
| allerr | logical indicating if all errors are returned or the first encountered |
| log | logical indicating if errors are printed to log in the workign directory, applies only if |
A results data.frame of IPI and metric scores, quality assurance results are returned if qa = TRUE (default)
IPI(stations, phab)#> StationCode SampleDate SampleAgencyCode PHAB_SampleID IPI #> 1 105PS0107 9/14/2009 SWAMP 105PS0107_9/14/2009_SWAMP 1.16 #> 2 205PS0157 6/19/2012 SWAMP 205PS0157_6/19/2012_SWAMP 1.04 #> 3 305PS0057 6/16/2009 SWAMP 305PS0057_6/16/2009_SWAMP 0.79 #> 4 504PS0147 6/23/2008 SWAMP 504PS0147_6/23/2008_SWAMP 0.78 #> 5 632PS0007 7/23/2008 SWAMP 632PS0007_7/23/2008_SWAMP 1.10 #> 6 901PS0057 5/14/2008 SWAMP 901PS0057_5/14/2008_SWAMP 1.08 #> IPI_percentile Ev_FlowHab Ev_FlowHab_score H_AqHab H_AqHab_pred H_AqHab_score #> 1 0.90 0.85 0.89 1.59 1.11 1.00 #> 2 0.62 0.96 1.00 1.42 1.35 0.80 #> 3 0.04 0.50 0.51 1.32 1.42 0.70 #> 4 0.03 0.28 0.28 1.24 1.30 0.72 #> 5 0.79 0.90 0.95 1.51 1.41 0.82 #> 6 0.74 0.70 0.73 1.52 1.38 0.84 #> H_SubNat H_SubNat_score PCT_SAFN PCT_RC PCT_SAFN_pred PCT_SAFN_score XCMG #> 1 1.57 0.83 6 0 24.60 1.00 99 #> 2 1.41 0.74 51 2 22.06 0.40 131 #> 3 0.49 0.26 83 0 29.51 0.12 152 #> 4 0.98 0.52 1 0 34.38 1.00 55 #> 5 1.80 0.95 14 0 13.49 0.79 126 #> 6 1.80 0.95 40 3 34.46 0.69 122 #> XCMG_pred XCMG_score IPI_qa Ev_FlowHab_qa H_AqHab_qa H_SubNat_qa PCT_SAFN_qa #> 1 93.64 0.78 1.00 1 1 1 1 #> 2 104.72 0.90 1.00 1 1 1 1 #> 3 106.05 1.00 1.00 1 1 1 1 #> 4 95.41 0.51 1.00 1 1 1 1 #> 5 123.10 0.76 1.00 1 1 1 1 #> 6 102.16 0.86 0.95 1 1 1 1 #> XCMG_qa #> 1 1.00 #> 2 1.00 #> 3 1.00 #> 4 1.00 #> 5 1.00 #> 6 0.95